STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_14730Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)    
Predicted Functional Partners:
pcyA
Phycocyanobilin:ferredoxin oxidoreductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family.
 
  
 0.823
WA1_28730
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.749
WA1_28940
Acetate kinase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.748
WA1_02665
Ferrochelatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ferrochelatase family.
     
 0.735
hemH
Photosystem II q(b) protein; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.735
WA1_28630
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.702
WA1_14705
Aspartoacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.684
WA1_06920
NADH:ubiquinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.681
WA1_11535
Aspartoacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AspA/AstE family. Aspartoacylase subfamily.
  
     0.676
WA1_02615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.641
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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