Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
WA1_15335 | WA1_15340 | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.768 |
WA1_15335 | WA1_15345 | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.548 |
WA1_15335 | WA1_39805 | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.440 |
WA1_15335 | WA1_46690 | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family. | 0.673 |
WA1_15335 | WA1_46705 | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. | 0.673 |
WA1_15340 | WA1_15335 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.768 |
WA1_15340 | WA1_15345 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.810 |
WA1_15345 | WA1_15335 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.548 |
WA1_15345 | WA1_15340 | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.810 |
WA1_39805 | WA1_15335 | AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.440 |
WA1_46690 | WA1_15335 | Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family. | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.673 |
WA1_46690 | WA1_46705 | Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family. | Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. | 0.994 |
WA1_46705 | WA1_15335 | Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. | DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.673 |
WA1_46705 | WA1_46690 | Photosystem I reaction center subunit XII; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer. | Photosystem I reaction center subunit X; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phycobilisome linker protein family. | 0.994 |