STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_15475ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (671 aa)    
Predicted Functional Partners:
recA
Transposase; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.730
WA1_15505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
WA1_15470
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
WA1_49135
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.491
WA1_08500
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.466
WA1_41940
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.445
WA1_21840
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.438
WA1_18640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.428
WA1_15465
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.410
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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