STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_15810Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)    
Predicted Functional Partners:
WA1_48530
Back-translocating Elongation Factor EF4; binds to the ribosome on the universally-conserved alpha-sarcin loop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.828
WA1_34985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.823
WA1_37435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.709
WA1_42490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.709
WA1_43635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.709
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.694
WA1_38250
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 0.670
WA1_29940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.643
WA1_24245
Crotonase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.601
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.585
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.