STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_17115Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
aroB
Catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.894
WA1_17090
Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.844
WA1_17095
Polyprenyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.840
WA1_17265
Glucose-fructose oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.832
WA1_17085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.829
WA1_17130
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.817
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 
 0.812
WA1_16700
Ribokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.812
WA1_25275
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.812
WA1_04345
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.791
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.