STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_18290S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
WA1_05235
Conjugal transfer protein TrbI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.857
WA1_30680
Polysaccharide pyruvyl transferase CsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
WA1_28100
LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
WA1_40685
LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
WA1_08770
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.599
WA1_41070
Polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.566
WA1_18320
CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.543
WA1_18285
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.511
WA1_40290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
WA1_12680
UDP-N-acetyl-D-mannosaminuronic acid transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family.
  
     0.466
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.