Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_18565Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)    
Predicted Functional Partners:
WA1_40625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.920
WA1_32135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.852
WA1_18535
Chromosome segregation protein SMC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.795
WA1_31020
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
WA1_31000
DNA sulfur modification protein DndD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.777
WA1_18560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_30985
DNA sulfur modification protein DndE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
WA1_31005
Sulfurtransferase DndC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
WA1_21275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.765
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.761
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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