STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_19340Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (263 aa)    
Predicted Functional Partners:
WA1_27330
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.784
WA1_30670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
WA1_30675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
psaE
Photosystem I reaction center subunit IV; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family.
  
     0.773
psb28
PsbW; part of the phosystem II reaction center; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Psb28 family.
  
     0.768
WA1_36470
Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
WA1_12300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
WA1_31710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
WA1_38800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
WA1_41715
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.