STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_19480RNB domain-containing ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
    
 0.983
WA1_23110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.873
WA1_29130
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.873
WA1_18250
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.831
WA1_43145
3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.831
rplX
50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 0.814
WA1_01810
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.784
WA1_15805
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.784
WA1_23900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.784
WA1_33625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.784
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.