Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_20165Zinc metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
WA1_20695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.931
WA1_01915
Bifunctional metallophosphatase/5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.840
WA1_04805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.684
WA1_16105
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.660
WA1_30205
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
 
     0.605
WA1_08680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
 0.590
WA1_06210
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.576
WA1_29765
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.574
WA1_20170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.571
WA1_09160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.534
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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