Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_20175Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (172 aa)    
Predicted Functional Partners:
WA1_23320
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.817
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.775
WA1_42700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.773
WA1_40845
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.719
pyrE
Bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
  0.706
WA1_32405
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
    
   0.704
WA1_40880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
   0.699
WA1_40860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.690
WA1_40865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.689
WA1_00255
Baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.687
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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