STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_20205Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (628 aa)    
Predicted Functional Partners:
WA1_17020
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.933
WA1_05700
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_05735
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_06905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.885
WA1_16380
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_40325
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_23525
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.884
WA1_35590
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.805
WA1_16830
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.762
glgB
Phosphotransferase; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
 0.759
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.