Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
WA1_21640ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
WA1_26395
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.886
WA1_33700
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.718
WA1_26200
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.656
WA1_10340
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.577
WA1_11595
SagB-type dehydrogenase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.577
WA1_17550
NADPH-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flavin oxidoreductase frp family.
  
    0.577
WA1_17950
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.577
WA1_34615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.577
WA1_34620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.577
WA1_52015
Nucleic acid-binding protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.577
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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