STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_22230Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
WA1_41865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.954
WA1_32345
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
    
 0.935
WA1_48560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.935
WA1_40320
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.928
WA1_29940
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.916
WA1_02835
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.885
WA1_16925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.878
WA1_37270
ATPase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
 0.862
WA1_19160
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.847
WA1_24445
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.847
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.