STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_22320Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
WA1_22235
Squalene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.918
WA1_22315
Dihydroflavonol 4-reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
WA1_22325
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
WA1_22240
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
WA1_22350
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.738
WA1_34550
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.738
WA1_22345
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.737
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.716
WA1_22300
Phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.691
WA1_29315
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.597
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.