Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_22845Pilus assembly protein PilB; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)    
Predicted Functional Partners:
WA1_41745
Pilus assembly protein PilC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.953
WA1_09455
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
WA1_32415
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.775
WA1_32410
Pilus assembly protein PilO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.722
WA1_32405
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
   
 
 0.721
WA1_32420
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.721
WA1_00740
Four helix bundle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
WA1_06560
Four helix bundle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
WA1_12930
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
WA1_26695
Four helix bundle protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.707
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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