Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WA1_23355Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
WA1_24360
Phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
WA1_02355
poly(A) polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
WA1_02360
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.559
WA1_16105
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
WA1_23345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.546
WA1_23350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.546
WA1_45380
Polynucleotide kinase-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
WA1_46985
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
WA1_32745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.506
rtcB
RNA-splicing ligase RtcB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RtcB family.
  
     0.468
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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