STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_24075Hypothetical protein; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)    
Predicted Functional Partners:
WA1_02630
Transposase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.864
WA1_24080
NACHT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.809
WA1_02600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.774
WA1_46280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.741
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.698
WA1_25430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.668
WA1_03770
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.619
WA1_47620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.608
WA1_02835
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.595
WA1_21065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.573
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.