STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_24655Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)    
Predicted Functional Partners:
WA1_40955
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
WA1_24650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
WA1_23325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
WA1_30385
Twitching motility protein PilT; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
WA1_40950
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
WA1_17520
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.500
WA1_13795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
sbcD
Exonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.475
WA1_24645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.475
WA1_00970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.