STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_25865Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
WA1_12790
poly(A) polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
  0.762
WA1_28575
Competence/damage-inducible protein A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
    
  0.736
WA1_42975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
WA1_26230
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
WA1_12300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
WA1_30670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
WA1_43285
Ribulose 1,5-bisphosphate carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.692
WA1_41715
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
WA1_41845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
WA1_46665
ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.