Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
WA1_26645CRISPR-associated protein Csx3; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)    
Predicted Functional Partners:
WA1_12875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.686
WA1_40200
Bile acid beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.686
WA1_41515
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.686
WA1_37435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.658
WA1_42490
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.658
WA1_43635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.658
WA1_13070
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.631
WA1_13080
Metallophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.631
WA1_27870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.631
WA1_34965
Fatty-acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.631
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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