STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_27500Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)    
Predicted Functional Partners:
WA1_02430
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.725
WA1_06175
Group 3/4 sigma-70 RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
 
 0.725
WA1_27595
RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.725
WA1_27505
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.712
WA1_32435
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the folylpolyglutamate synthase family.
  
    0.654
WA1_18320
CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.617
WA1_27495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
WA1_27510
Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
WA1_20000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.452
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.