STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_28775S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the OprB family. (578 aa)    
Predicted Functional Partners:
WA1_43505
Resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.741
WA1_43500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
WA1_23810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
WA1_28085
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
WA1_13455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
ndhO
NAD(P)H-quinone oxidoreductase; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.540
WA1_35815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
WA1_23260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.526
WA1_21805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
WA1_14335
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.517
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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