STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_38365Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (384 aa)    
Predicted Functional Partners:
WA1_38370
Adenylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
WA1_43290
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.771
WA1_39290
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.749
WA1_38395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.747
WA1_33065
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.705
WA1_41375
Cyanophycin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.611
WA1_38375
MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
WA1_22225
Glutamate--cysteine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.495
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 0.491
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
    
 0.489
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.