STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WA1_41515Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)    
Predicted Functional Partners:
WA1_39805
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.971
WA1_11855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.962
WA1_31175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.962
WA1_38775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.957
WA1_32345
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.952
WA1_48560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.952
WA1_04055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.948
WA1_06440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
WA1_08050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.948
WA1_24475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.948
Your Current Organism:
Scytonema hofmannii
NCBI taxonomy Id: 128403
Other names: S. hofmannii PCC 7110, Scytonema hofmannii PCC 7110, Scytonema sp. ATCC 29171, Scytonema sp. PCC 7110
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.