STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC18158.1Sugar (pentulose or hexulose) kinase. (464 aa)    
Predicted Functional Partners:
SDC22594.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.900
SDC22627.1
L-rhamnose isomerase / sugar isomerase.
  
 0.894
SDC18025.1
Hypothetical protein.
 
 
 
 0.860
SDC10460.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.821
SDC33615.1
DNA-binding transcriptional regulator, GntR family.
 
 
 
 0.819
SDD83300.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
 
 
 0.819
SDC18065.1
L-fuculose-phosphate aldolase.
 
 
 0.760
SDC18107.1
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.679
SDC22556.1
L-rhamnose-H+ transport protein.
 
  
 0.614
SDE33388.1
Regulatory protein, gntR family.
 
 
 
 0.606
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.