STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC40434.1Xylulokinase. (505 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.993
SDD52675.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.939
SDD46504.1
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.916
SDC40400.1
Transcriptional regulator, LacI family.
 
 
 
 0.669
SDC22594.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
  
 
 0.584
SDB98935.1
Autoinducer 2 (AI-2) kinase.
  
  
  0.575
SDC18065.1
L-fuculose-phosphate aldolase.
 
 
 0.512
SDC47118.1
Sugar (pentulose or hexulose) kinase.
  
  
 
0.507
SDC10460.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.504
SDC00091.1
L-rhamnose mutarotase.
  
  
 0.504
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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