STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC82074.1OmpA family protein. (703 aa)    
Predicted Functional Partners:
SDC88550.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.576
SDD23896.1
Chemotaxis protein MotB.
   
 0.574
SDC60471.1
Lipoprotein-releasing system permease protein.
  
 
   0.571
SDC82100.1
Hypothetical protein.
       0.540
SDD98478.1
Transglycosylase SLT domain-containing protein.
  
     0.537
SDC02332.1
Tfp pilus assembly protein PilF.
   
 
 0.508
SDD81833.1
Imidazolonepropionase.
  
  0.500
SDC09024.1
Hypothetical protein.
  
  0.498
SDC10816.1
Oligogalacturonide lyase.
  
  0.498
SDC36584.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.498
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.