STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD78148.1FAD dependent oxidoreductase. (756 aa)    
Predicted Functional Partners:
SDD78178.1
Transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.946
SDD78111.1
Starch-binding associating with outer membrane.
 
     0.901
SDD78244.1
Hypothetical protein.
    
  0.771
SDD78078.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.768
SDD78348.1
Alpha-L-fucosidase.
 
     0.760
SDD78311.1
Hypothetical protein.
 
     0.734
SDD78280.1
Lysophospholipase L1.
       0.683
SDD78214.1
Hypothetical protein.
       0.682
SDC15096.1
FAD dependent oxidoreductase.
 
 
 0.638
SDC63375.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
 
 0.551
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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