SDE00606.1 protein (Niabella drilacis) - STRING interaction network

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

SDE00606.1

RHS repeat-associated core domain-containing protein. (393 aa)

Predicted Functional Partners:

SDE00764.1

0.835

SDD44155.1

0.773

SDE00574.1

0.773

SDD42935.1

0.769

SDE00670.1

0.589

SDD43174.1

0.510

SDE00725.1

0.493

SDD43280.1

0.481

SDE00640.1

0.475

SDD12146.1

0.465

Your Current Organism:

Niabella drilacis

NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDD12146.1	SDD42935.1	SAMN04487894_106103	SAMN04487894_10941	IPT/TIG domain-containing protein.	YD repeat-containing protein.	0.498
SDD12146.1	SDD44155.1	SAMN04487894_106103	SAMN04487894_10973	IPT/TIG domain-containing protein.	Hypothetical protein.	0.483
SDD12146.1	SDE00606.1	SAMN04487894_106103	SAMN04487894_1184	IPT/TIG domain-containing protein.	RHS repeat-associated core domain-containing protein.	0.465
SDD12146.1	SDE00670.1	SAMN04487894_106103	SAMN04487894_1186	IPT/TIG domain-containing protein.	RHS repeat-associated core domain-containing protein.	0.495
SDD12146.1	SDE00725.1	SAMN04487894_106103	SAMN04487894_1188	IPT/TIG domain-containing protein.	RHS repeat-associated core domain-containing protein.	0.479
SDD12146.1	SDE00764.1	SAMN04487894_106103	SAMN04487894_1189	IPT/TIG domain-containing protein.	YD repeat-containing protein.	0.532
SDD42935.1	SDD12146.1	SAMN04487894_10941	SAMN04487894_106103	YD repeat-containing protein.	IPT/TIG domain-containing protein.	0.498
SDD42935.1	SDD43174.1	SAMN04487894_10941	SAMN04487894_10947	YD repeat-containing protein.	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	0.598
SDD42935.1	SDD43280.1	SAMN04487894_10941	SAMN04487894_10950	YD repeat-containing protein.	Type II secretion system protein G (GspG).	0.577
SDD42935.1	SDE00606.1	SAMN04487894_10941	SAMN04487894_1184	YD repeat-containing protein.	RHS repeat-associated core domain-containing protein.	0.769
SDD42935.1	SDE00670.1	SAMN04487894_10941	SAMN04487894_1186	YD repeat-containing protein.	RHS repeat-associated core domain-containing protein.	0.776
SDD42935.1	SDE00725.1	SAMN04487894_10941	SAMN04487894_1188	YD repeat-containing protein.	RHS repeat-associated core domain-containing protein.	0.777
SDD43174.1	SDD42935.1	SAMN04487894_10947	SAMN04487894_10941	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	YD repeat-containing protein.	0.598
SDD43174.1	SDD43280.1	SAMN04487894_10947	SAMN04487894_10950	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	Type II secretion system protein G (GspG).	0.942
SDD43174.1	SDD44155.1	SAMN04487894_10947	SAMN04487894_10973	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	Hypothetical protein.	0.492
SDD43174.1	SDE00606.1	SAMN04487894_10947	SAMN04487894_1184	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	RHS repeat-associated core domain-containing protein.	0.510
SDD43174.1	SDE00670.1	SAMN04487894_10947	SAMN04487894_1186	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	RHS repeat-associated core domain-containing protein.	0.455
SDD43174.1	SDE00764.1	SAMN04487894_10947	SAMN04487894_1189	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	YD repeat-containing protein.	0.540
SDD43280.1	SDD42935.1	SAMN04487894_10950	SAMN04487894_10941	Type II secretion system protein G (GspG).	YD repeat-containing protein.	0.577
SDD43280.1	SDD43174.1	SAMN04487894_10950	SAMN04487894_10947	Type II secretion system protein G (GspG).	Type IV pilus assembly protein PilQ; Belongs to the bacterial secretin family.	0.942

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Network Stats

number of nodes:

7

number of edges:

10

average node degree:

2.86

avg. local clustering coefficient:

0.895

expected number of edges:

7

PPI enrichment p-value:

0.212

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006548

Histidine catabolic process

4 of 5

2.43

2.77

5.24e-06

GO:0006547

Histidine metabolic process

5 of 20

1.93

2.45

5.24e-06

GO:0019557

Histidine catabolic process to glutamate and formate

3 of 4

2.41

1.89

0.00029

GO:0019556

Histidine catabolic process to glutamate and formamide

3 of 4

2.41

1.89

0.00029

GO:1901565

Organonitrogen compound catabolic process

5 of 94

1.26

1.11

0.00080

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:5764

Histidine metabolism, and UbiC transcription regulator-associated

6 of 6

2.53

5.24

4.78e-11

CL:5730

Mixed, incl. Glycine betaine transport, and Histidine catabolic process

8 of 24

2.05

4.91

1.54e-12

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00340

Histidine metabolism

6 of 28

1.86

3.2

1.86e-08

map01100

Metabolic pathways

10 of 1328

0.41

0.31

0.0146

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0369

Histidine metabolism

3 of 3

2.53

2.19

8.41e-05

KW-0660

Purine salvage

2 of 4

2.23

1.01

0.0131

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF05013

N-formylglutamate amidohydrolase

2 of 3

2.35

0.74

0.0454

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