STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE03045.1Glucose uptake protein. (333 aa)    
Predicted Functional Partners:
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.783
SDE02961.1
Inosine-uridine nucleoside N-ribohydrolase.
 
    0.672
SDC35840.1
Starch-binding associating with outer membrane.
  
     0.568
SDC05720.1
alpha-L-rhamnosidase.
  
     0.560
SDC71336.1
Hypothetical protein.
  
     0.534
SDC17279.1
Predicted dehydrogenase.
  
     0.501
SDD84152.1
Hypothetical protein.
  
     0.490
SDE02990.1
Starch-binding associating with outer membrane.
       0.475
SDE03020.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.475
SDD71587.1
Hypothetical protein.
  
     0.469
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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