Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMG96788.1Transporter associated domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)    
Predicted Functional Partners:
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.700
AMG96510.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.549
AMG97469.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.524
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
     0.520
AMG95561.1
Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.505
glcR
DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
AMG97625.1
Glyoxal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.474
AMG96789.1
PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.474
PfkB
1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
       0.474
AMG97626.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.470
Your Current Organism:
Staphylococcus simulans
NCBI taxonomy Id: 1286
Other names: ATCC 27848, CCUG 7327 A, CIP 81.64, DSM 20322, HAMBI 2058, JCM 2424, NCTC 11046, NRRL B-14753, S. simulans
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