STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C266_02226ABC transporter ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component. (238 aa)    
Predicted Functional Partners:
C266_02241
COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 0.993
C266_18576
LPT family ABC transporter permease; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.984
macB
Macrolide-specific ABC-type efflux carrier; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
0.956
macB-2
ABC transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
0.956
lolA
Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.953
C266_02231
Secretion protein HlyD family protein; COG0845 Membrane-fusion protein.
 
 0.926
C266_02236
RND efflux system outer membrane lipoprotein; COG1538 Outer membrane protein.
   
  0.922
C266_24705
Multifunctional ribosome-associated ATPase/membrane protein; COG1131 ABC-type multidrug transport system, ATPase component.
    
0.891
C266_05509
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.872
C266_06861
COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.872
Your Current Organism:
Pandoraea sp. SD62
NCBI taxonomy Id: 1286093
Other names: P. sp. SD6-2, Pandoraea sp. SD6-2
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