STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C266_09979Bacterioferritin; Iron-storage protein. (159 aa)    
Predicted Functional Partners:
C266_09969
BFD/(2Fe-2S)-binding domain-containing protein; COG2906 Bacterioferritin-associated ferredoxin.
 
 
 0.977
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.931
C266_16045
Nitrate reductase; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.894
C266_23161
COG2132 Putative multicopper oxidases.
  
 
 0.573
cyaY
Frataxin-like protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.
     
 0.568
C266_21474
COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
  
 0.563
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.556
C266_00870
Hypothetical protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
   
  
 0.534
C266_03483
Hypothetical protein.
   
  
 0.534
C266_23051
Signal peptide protein.
   
  
 0.534
Your Current Organism:
Pandoraea sp. SD62
NCBI taxonomy Id: 1286093
Other names: P. sp. SD6-2, Pandoraea sp. SD6-2
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