STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnW2-aminoethylphosphonate--pyruvate transaminase PhnW; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (367 aa)    
Predicted Functional Partners:
phnXW
Bifunctional phosphonoacetaldehyde hydrolase/aminoethylphosphonate transaminase.
   
 0.940
purD
Phosphoribosylamine--glycine ligase PurD; Belongs to the GARS family.
  
    0.572
alaS
alanyl-tRNA synthetase AlaS; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  
 0.570
AHM57402.1
Hypothetical protein.
       0.541
adhE
Aldehyde-alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.461
fchA
Methenyltetrahydrofolate cyclohydrolase FchA.
  
  
 0.432
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ.
  
  
 0.424
lldD
L-lactate dehydrogenase LldD; Cytochrome.
   
 0.407
Your Current Organism:
Peptoclostridium acidaminophilum
NCBI taxonomy Id: 1286171
Other names: Eubacterium acidaminophilum DSM 3953, Eubacterium acidaminophilum al-2, P. acidaminophilum DSM 3953, Peptoclostridium acidaminophilum DSM 3953, Peptoclostridium acidaminophilum al-2
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