STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_9128Putative rrna processing protein. (725 aa)    
Predicted Functional Partners:
UCREL1_5203
Putative sas10 utp3 family protein.
   
   0.969
UCREL1_11754
Putative rrna processing protein.
   
 
 0.932
UCREL1_9149
Putative transcription factor aatf che-1 protein.
   
 
 0.899
UCREL1_953
Putative rna recognition domain-containing protein.
   
 
 0.887
UCREL1_3215
Putative rrna processing protein.
 
 
    0.886
UCREL1_2241
Putative nucleolar protein nop58 protein.
   
   0.867
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.853
UCREL1_2904
Putative atp-dependent rna helicase dbp9 protein.
   
 
 0.851
UCREL1_9663
U3 small nucleolar RNA-associated protein 22.
   
 
 0.846
UCREL1_10401
Putative ribosome biogenesis protein ssf1 protein.
   
    0.846
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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