UCREL1_10355 protein (Eutypa lata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UCREL1_10355

Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (527 aa)

Predicted Functional Partners:

UCREL1_9999

0.999

UCREL1_7055

0.999

UCREL1_5824

0.999

UCREL1_5578

0.999

UCREL1_2516

0.999

UCREL1_4958

0.996

UCREL1_535

0.995

UCREL1_11518

0.991

UCREL1_5163

0.990

UCREL1_11170

0.989

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10355	UCREL1_11170	M7SET0	M7S744	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative 60s ribosomal protein l26 protein.	0.989
UCREL1_10355	UCREL1_11518	M7SET0	M7SBM4	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative 60s ribosomal protein l35 protein.	0.991
UCREL1_10355	UCREL1_2516	M7SET0	M7T0T6	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative wd repeat protein.	0.999
UCREL1_10355	UCREL1_4958	M7SET0	M7SU22	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative signal recognition particle receptor subunit alpha protein.	0.996
UCREL1_10355	UCREL1_5163	M7SET0	M7SU79	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative 60s ribosomal protein l5 protein.	0.990
UCREL1_10355	UCREL1_535	M7SET0	M7T6Y2	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative 60s ribosomal protein l25 protein.	0.995
UCREL1_10355	UCREL1_5578	M7SET0	M7SSC8	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative signal recognition particle protein.	0.999
UCREL1_10355	UCREL1_5824	M7SET0	M7SRS0	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative signal recognition particle 68 kDa protein.	0.999
UCREL1_10355	UCREL1_7055	M7SET0	M7SNF9	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative signal recognition particle protein sec65 protein.	0.999
UCREL1_10355	UCREL1_9999	M7SET0	M7SA85	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Putative signal recognition particle 14kd protein.	0.999
UCREL1_11170	UCREL1_10355	M7S744	M7SET0	Putative 60s ribosomal protein l26 protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.989
UCREL1_11170	UCREL1_11518	M7S744	M7SBM4	Putative 60s ribosomal protein l26 protein.	Putative 60s ribosomal protein l35 protein.	0.999
UCREL1_11170	UCREL1_2516	M7S744	M7T0T6	Putative 60s ribosomal protein l26 protein.	Putative wd repeat protein.	0.871
UCREL1_11170	UCREL1_4958	M7S744	M7SU22	Putative 60s ribosomal protein l26 protein.	Putative signal recognition particle receptor subunit alpha protein.	0.901
UCREL1_11170	UCREL1_5163	M7S744	M7SU79	Putative 60s ribosomal protein l26 protein.	Putative 60s ribosomal protein l5 protein.	0.999
UCREL1_11170	UCREL1_535	M7S744	M7T6Y2	Putative 60s ribosomal protein l26 protein.	Putative 60s ribosomal protein l25 protein.	0.999
UCREL1_11170	UCREL1_5578	M7S744	M7SSC8	Putative 60s ribosomal protein l26 protein.	Putative signal recognition particle protein.	0.709
UCREL1_11170	UCREL1_5824	M7S744	M7SRS0	Putative 60s ribosomal protein l26 protein.	Putative signal recognition particle 68 kDa protein.	0.888
UCREL1_11170	UCREL1_7055	M7S744	M7SNF9	Putative 60s ribosomal protein l26 protein.	Putative signal recognition particle protein sec65 protein.	0.873
UCREL1_11170	UCREL1_9999	M7S744	M7SA85	Putative 60s ribosomal protein l26 protein.	Putative signal recognition particle 14kd protein.	0.703

page 1 of 6

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About