STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_6018Putative lariat debranching enzyme protein. (334 aa)    
Predicted Functional Partners:
UCREL1_10021
Putative maintenance of ploidy protein mob1 protein.
 
      0.825
UCREL1_11225
Putative pre-mrna-splicing factor atp-dependent rna helicase prp16 protein.
    
 
 0.819
UCREL1_3012
Putative cwfj domain-containing protein.
   
 
 0.640
UCREL1_3855
Putative nuclear import and export protein.
   
  
 0.630
UCREL1_5814
Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.
      
 0.614
UCREL1_11249
Peptidylprolyl isomerase.
      
 0.587
UCREL1_7960
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
      
 0.583
UCREL1_6017
Putative wsc domain protein.
 
      0.577
UCREL1_2719
Putative prp18 domain-containing protein.
    
 
 0.547
UCREL1_10951
Putative g-patch domain-containing protein.
   
 
 0.522
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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