STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_5593tRNA ligase. (800 aa)    
Predicted Functional Partners:
UCREL1_5117
Putative rna recognition motif containing protein.
   
  
 0.628
UCREL1_9910
Putative trna-splicing endonuclease subunit sen34 protein.
      
 0.616
UCREL1_11465
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
      
 0.616
UCREL1_10023
Putative trna 2-phosphotransferase 1 protein.
      
 0.616
UCREL1_5607
Uncharacterized protein.
      
 0.616
UCREL1_742
Putative 2-cyclic-nucleotide 3-phosphodiesterase protein.
      
 0.615
UCREL1_5987
Putative trna-splicing endonuclease subunit sen54-like protein.
      
 0.613
UCREL1_6033
Putative transcriptional activator hac1 protein.
      
 0.583
UCREL1_10769
Putative atp-dependent rna helicase eif4a protein; Belongs to the DEAD box helicase family.
      
 0.491
UCREL1_8934
Putative phenylalanyl-trna beta subunit protein.
      
 0.487
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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