STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_5094Putative 116 kDa u5 small nuclear ribonucleoprotein component protein. (997 aa)    
Predicted Functional Partners:
UCREL1_7743
Putative mrna splicing factor (Prp1 zer1) protein.
   
 0.999
UCREL1_4159
Putative wd repeat-containing protein.
   
 0.999
UCREL1_11507
Putative sec63 brl domain-containing protein.
   
 0.999
UCREL1_2521
Putative pre-mrna processing splicing factor 8 protein.
   
 0.999
UCREL1_6890
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
UCREL1_1247
Putative pre-mrna-splicing atp-dependent rna helicase prp28 protein; Belongs to the DEAD box helicase family.
   
 0.998
UCREL1_5453
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
UCREL1_3674
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.997
UCREL1_530
Putative small nuclear ribonucleo protein.
   
 0.997
UCREL1_840
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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