UCREL1_5048 protein (Eutypa lata) - STRING interaction network

Nodes:

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

UCREL1_5048

Putative pinin sdk mema domain protein. (290 aa)

Predicted Functional Partners:

UCREL1_2718

0.987

UCREL1_2652

0.950

UCREL1_6172

0.890

UCREL1_8603

0.882

UCREL1_5597

0.854

UCREL1_10674

0.837

UCREL1_7202

0.831

UCREL1_1627

0.831

UCREL1_4802

0.790

UCREL1_1370

0.781

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
UCREL1_10674	UCREL1_1370	M7SDY1	M7T3Y1	Putative polyadenylate-binding protein 2 protein.	Putative rna-binding protein 8a protein.	0.874
UCREL1_10674	UCREL1_2652	M7SDY1	M7SUT0	Putative polyadenylate-binding protein 2 protein.	Putative sap domain-containing protein.	0.911
UCREL1_10674	UCREL1_2718	M7SDY1	M7T125	Putative polyadenylate-binding protein 2 protein.	Putative sin3-associated polypeptide protein.	0.890
UCREL1_10674	UCREL1_4802	M7SDY1	M7SP56	Putative polyadenylate-binding protein 2 protein.	Putative nonsense-mediated mrna decay protein.	0.821
UCREL1_10674	UCREL1_5048	M7SDY1	M7STU3	Putative polyadenylate-binding protein 2 protein.	Putative pinin sdk mema domain protein.	0.837
UCREL1_10674	UCREL1_5597	M7SDY1	M7SSC4	Putative polyadenylate-binding protein 2 protein.	Putative mago nashi domain protein.	0.792
UCREL1_10674	UCREL1_6172	M7SDY1	M7SQS0	Putative polyadenylate-binding protein 2 protein.	Putative pwi domain mrna processing protein.	0.673
UCREL1_10674	UCREL1_7202	M7SDY1	M7SN09	Putative polyadenylate-binding protein 2 protein.	Putative glutamic acid rich protein.	0.661
UCREL1_10674	UCREL1_8603	M7SDY1	M7T3J8	Putative polyadenylate-binding protein 2 protein.	Putative atp-dependent rna helicase fal-1 protein; Belongs to the DEAD box helicase family.	0.915
UCREL1_1370	UCREL1_10674	M7T3Y1	M7SDY1	Putative rna-binding protein 8a protein.	Putative polyadenylate-binding protein 2 protein.	0.874
UCREL1_1370	UCREL1_1627	M7T3Y1	M7T404	Putative rna-binding protein 8a protein.	Uncharacterized protein.	0.874
UCREL1_1370	UCREL1_2652	M7T3Y1	M7SUT0	Putative rna-binding protein 8a protein.	Putative sap domain-containing protein.	0.757
UCREL1_1370	UCREL1_2718	M7T3Y1	M7T125	Putative rna-binding protein 8a protein.	Putative sin3-associated polypeptide protein.	0.850
UCREL1_1370	UCREL1_4802	M7T3Y1	M7SP56	Putative rna-binding protein 8a protein.	Putative nonsense-mediated mrna decay protein.	0.982
UCREL1_1370	UCREL1_5048	M7T3Y1	M7STU3	Putative rna-binding protein 8a protein.	Putative pinin sdk mema domain protein.	0.781
UCREL1_1370	UCREL1_5597	M7T3Y1	M7SSC4	Putative rna-binding protein 8a protein.	Putative mago nashi domain protein.	0.999
UCREL1_1370	UCREL1_6172	M7T3Y1	M7SQS0	Putative rna-binding protein 8a protein.	Putative pwi domain mrna processing protein.	0.780
UCREL1_1370	UCREL1_7202	M7T3Y1	M7SN09	Putative rna-binding protein 8a protein.	Putative glutamic acid rich protein.	0.766
UCREL1_1370	UCREL1_8603	M7T3Y1	M7T3J8	Putative rna-binding protein 8a protein.	Putative atp-dependent rna helicase fal-1 protein; Belongs to the DEAD box helicase family.	0.999
UCREL1_1627	UCREL1_1370	M7T404	M7T3Y1	Uncharacterized protein.	Putative rna-binding protein 8a protein.	0.874

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Network Stats

number of nodes:

11

number of edges:

32

average node degree:

5.82

avg. local clustering coefficient:

0.814

expected number of edges:

31

PPI enrichment p-value:

0.42

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009102

Biotin biosynthetic process

4 of 6

2.29

2.43

2.01e-05

GO:0072330

Monocarboxylic acid biosynthetic process

5 of 30

1.68

1.98

2.19e-05

GO:0046394

Carboxylic acid biosynthetic process

6 of 107

1.21

1.17

0.00022

GO:0044281

Small molecule metabolic process

7 of 429

0.67

0.46

0.0126

GO:0071704

Organic substance metabolic process

10 of 1181

0.39

0.28

0.0258

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:36584052

(2022) The inside scoop: Comparative genomics of two intranuclear bacteria, Candidatus Berkiella cookevillensis and Candidatus Berkiella aquae.

4 of 114

1.01

0.78

0.0028

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1111

Biotin metabolic process

4 of 5

2.37

2.7

6.44e-06

CL:1034

Mixed, incl. Vitamin biosynthetic process, and Coenzyme A metabolic process

5 of 45

1.51

1.59

9.73e-05

CL:842

Small molecule biosynthetic process, and Nucleotide biosynthetic process

6 of 141

1.09

0.97

0.00055

CL:1311

Phosphopantetheine, and Fatty acid synthase activity

2 of 5

2.06

0.85

0.0254

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00780

Biotin metabolism

5 of 26

1.75

2.32

3.19e-06

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0093

Biotin biosynthesis

2 of 3

2.29

0.9

0.0221

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