STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_1228Putative gcd10p family protein. (643 aa)    
Predicted Functional Partners:
UCREL1_827
Putative trna methyltransferase complex gcd14 subunit protein.
   
 0.999
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
    0.846
UCREL1_4089
Putative atp-dependent rna helicase dbp3 protein; Belongs to the DEAD box helicase family.
   
   0.819
UCREL1_2904
Putative atp-dependent rna helicase dbp9 protein.
   
   0.818
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
  
 0.807
UCREL1_3373
Putative trna (Uridine-2-o-)-methyltransferase trm7 protein.
   
  
 0.787
UCREL1_9532
RNA helicase.
   
   0.783
UCREL1_6893
Putative-dimethylguanosine trna methyltransferase protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
   
  
 0.759
UCREL1_953
Putative rna recognition domain-containing protein.
   
    0.759
UCREL1_3455
Putative brix domain-containing protein.
   
  
 0.752
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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