STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_10030Putative dna repair protein rhp41 protein. (345 aa)    
Predicted Functional Partners:
UCREL1_10280
Putative uv excision repair protein.
   
 0.972
UCREL1_931
Putative tfiih p62 subunit domain-containing protein.
    
 0.912
UCREL1_11433
Putative rad4 family protein.
  
  
 
0.908
UCREL1_1799
Putative dna repair helicase rad25 protein.
   
 0.905
UCREL1_10574
Putative cell division control protein cdc31 protein.
    
 0.878
UCREL1_3163
Putative ef-hand superfamily ca2+-modulated protein.
    
 0.862
UCREL1_11571
Putative dna repair helicase rad15 protein.
    
 0.860
UCREL1_1155
Putative dna repair protein rad14 protein.
    
 0.812
UCREL1_9807
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.801
UCREL1_6123
Putative rna polymerase ii transcription factor b subunit 4 protein.
    
 0.773
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.