STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_9698H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (227 aa)    
Predicted Functional Partners:
UCREL1_6245
Putative h aca ribonucleoprotein complex subunit 2 protein.
   
 0.950
UCREL1_1851
Putative centromere microtubule-binding protein cbf5 protein.
   
 0.942
UCREL1_5225
Putative h aca ribonucleoprotein complex subunit 3 protein.
   
 0.914
UCREL1_9568
CDP-diacylglycerol--serine O-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
      0.883
UCREL1_9421
Putative trna pseudouridine synthase b protein.
   
 0.844
UCREL1_303
Putative wd repeat domain-containing protein.
    
 0.823
UCREL1_7355
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.774
UCREL1_1099
Putative rrna 2-o-methyltransferase fibrillarin protein.
   
 
 0.759
UCREL1_1789
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.726
UCREL1_10558
Putative 60s ribosomal protein l8 protein.
   
 0.726
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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