STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UCREL1_6185Putative nad dependent epimerase dehydratase protein. (263 aa)    
Predicted Functional Partners:
UCREL1_7799
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.564
UCREL1_223
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.564
UCREL1_9891
Putative rna polymerase rpb4 protein.
    
 0.545
UCREL1_9247
Putative dna-directed rna polymerases i protein.
    
 0.545
UCREL1_6509
Putative rna polymerase ii subunit 3 protein.
    
 0.545
UCREL1_8824
Putative dna-directed rna polymerases ii 24 kDa polypeptide protein.
    
 0.545
UCREL1_1430
Putative dna-directed rna polymerases i ii iii subunit 10 protein.
    
 0.545
UCREL1_4451
Putative metallothionein-i gene transcription activator protein.
    
 0.545
UCREL1_375
Putative dna-directed rna polymerase ii subunit rpb11 protein.
    
 0.544
UCREL1_380
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.532
Your Current Organism:
Eutypa lata
NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1
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