UCREL1_4470 protein (Eutypa lata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UCREL1_4470

Putative duf1713 domain-containing protein. (235 aa)

Predicted Functional Partners:

UCREL1_5827

0.953

UCREL1_119

0.830

UCREL1_329

0.830

UCREL1_7436

0.825

UCREL1_3488

0.825

UCREL1_3213

0.825

NAT10

0.791

UCREL1_5924

0.781

UCREL1_11514

0.747

UCREL1_9956

0.662

Your Current Organism:

Eutypa lata

NCBI taxonomy Id: 1287681
Other names: E. lata UCREL1, Eutypa lata UCREL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	UCREL1_4470	M7SX58	M7TP71	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Putative duf1713 domain-containing protein.	0.791
UCREL1_11514	UCREL1_4470	M7SBL7	M7TP71	Putative rho-type gtpase-activating protein 1 protein.	Putative duf1713 domain-containing protein.	0.747
UCREL1_11514	UCREL1_5827	M7SBL7	M7TBD1	Putative rho-type gtpase-activating protein 1 protein.	Putative rho-type gtpase-activating protein.	0.873
UCREL1_119	UCREL1_4470	M7T1K1	M7TP71	Putative ccch zinc finger domain-containing protein.	Putative duf1713 domain-containing protein.	0.830
UCREL1_119	UCREL1_9956	M7T1K1	M7SG31	Putative ccch zinc finger domain-containing protein.	Putative ankyrin repeat protein.	0.450
UCREL1_3213	UCREL1_4470	M7STB7	M7TP71	Putative frequency clock protein.	Putative duf1713 domain-containing protein.	0.825
UCREL1_329	UCREL1_4470	M7T6X6	M7TP71	Uncharacterized protein.	Putative duf1713 domain-containing protein.	0.830
UCREL1_329	UCREL1_9956	M7T6X6	M7SG31	Uncharacterized protein.	Putative ankyrin repeat protein.	0.450
UCREL1_3488	UCREL1_4470	M7SSI8	M7TP71	Putative phage tail assembly-like protein.	Putative duf1713 domain-containing protein.	0.825
UCREL1_4470	NAT10	M7TP71	M7SX58	Putative duf1713 domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.791
UCREL1_4470	UCREL1_11514	M7TP71	M7SBL7	Putative duf1713 domain-containing protein.	Putative rho-type gtpase-activating protein 1 protein.	0.747
UCREL1_4470	UCREL1_119	M7TP71	M7T1K1	Putative duf1713 domain-containing protein.	Putative ccch zinc finger domain-containing protein.	0.830
UCREL1_4470	UCREL1_3213	M7TP71	M7STB7	Putative duf1713 domain-containing protein.	Putative frequency clock protein.	0.825
UCREL1_4470	UCREL1_329	M7TP71	M7T6X6	Putative duf1713 domain-containing protein.	Uncharacterized protein.	0.830
UCREL1_4470	UCREL1_3488	M7TP71	M7SSI8	Putative duf1713 domain-containing protein.	Putative phage tail assembly-like protein.	0.825
UCREL1_4470	UCREL1_5827	M7TP71	M7TBD1	Putative duf1713 domain-containing protein.	Putative rho-type gtpase-activating protein.	0.953
UCREL1_4470	UCREL1_5924	M7TP71	M7SRG2	Putative duf1713 domain-containing protein.	Putative adp-ribosylation factor family protein.	0.781
UCREL1_4470	UCREL1_7436	M7TP71	M7SMG8	Putative duf1713 domain-containing protein.	Putative tubulin-specific chaperone c protein.	0.825
UCREL1_4470	UCREL1_9956	M7TP71	M7SG31	Putative duf1713 domain-containing protein.	Putative ankyrin repeat protein.	0.662
UCREL1_5827	UCREL1_11514	M7TBD1	M7SBL7	Putative rho-type gtpase-activating protein.	Putative rho-type gtpase-activating protein 1 protein.	0.873