STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK86942.1C4-dicarboxylate transporter, DctM subunit. (431 aa)    
Predicted Functional Partners:
SEK86984.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.993
SEK87028.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 0.993
SEL29641.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.877
SEL29757.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.856
SEM28616.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.855
SEL42823.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 0.854
SEK86886.1
N,N-dimethylformamidase.
       0.773
SEM32228.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.751
SEL19832.1
TRAP transporter, DctM subunit.
  
 
0.655
SEL20360.1
TRAP transporter, DctM subunit.
  
 
0.643
Your Current Organism:
Roseovarius azorensis
NCBI taxonomy Id: 1287727
Other names: DSM 100674, KCTC 32421, MTCC 11812, R. azorensis, Roseovarius azorensis Rajasabapathy et al. 2014, Roseovarius sp. SSW084, strain SSW084
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