STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL71191.1HlyD family secretion protein. (319 aa)    
Predicted Functional Partners:
SEL71266.1
ABC-2 type transport system permease protein.
 
  
 0.958
SEL71299.1
ABC-2 type transport system permease protein.
 
  
 0.951
SEL71227.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.949
SEK22106.1
Outer membrane protein.
 
 0.876
SEL71160.1
ABC-2 type transport system permease protein.
 
  
 0.850
SEL71126.1
Ribosome-dependent ATPase.
 
  
 0.827
SEM29876.1
Outer membrane protein TolC.
  
 0.814
lolD
Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.555
SEK97353.1
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.518
SEK86515.1
Membrane fusion protein, multidrug efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.466
Your Current Organism:
Roseovarius azorensis
NCBI taxonomy Id: 1287727
Other names: DSM 100674, KCTC 32421, MTCC 11812, R. azorensis, Roseovarius azorensis Rajasabapathy et al. 2014, Roseovarius sp. SSW084, strain SSW084
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