STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ27055.1Type II secretion system protein. (128 aa)    
Predicted Functional Partners:
gspG
General secretion pathway protein G.
  
 
  0.978
ALJ27052.1
Type II secretory pathway, component PulK.
  
 
 0.897
ALJ27054.1
Hypothetical protein; Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.800
ALJ27053.1
Prepilin-type cleavage/methylation protein.
       0.788
ALJ27058.1
Type II secretion system protein.
  
   0.642
gspF
General secretion pathway protein F.
  
    0.620
ALJ27048.1
Type II secretory pathway, component PulD.
  
  
 0.607
ALJ27051.1
Hypothetical protein.
       0.607
ALJ27050.1
Hypothetical protein.
       0.602
ALJ27047.1
Hypothetical protein.
       0.580
Your Current Organism:
Stenotrophomonas acidaminiphila
NCBI taxonomy Id: 128780
Other names: ATCC 700916, CCUG 46887, CIP 106456, DSM 13117, JCM 13310, S. acidaminiphila, Stenotrophomonas acidaminiphila Assih et al. 2002, strain AMX 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.