Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALJ27478.1 | ALJ27479.1 | AOT14_10660 | AOT14_10670 | OstA family protein. | LPS export ABC transporter periplasmic protein LptC. | 0.995 |
ALJ27478.1 | kdsC | AOT14_10660 | AOT14_10680 | OstA family protein. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. | 0.854 |
ALJ27478.1 | kdsD | AOT14_10660 | AOT14_10690 | OstA family protein. | Arabinose 5-phosphate isomerase. | 0.754 |
ALJ27478.1 | lptB | AOT14_10660 | AOT14_10650 | OstA family protein. | ABC transporter ATP-binding protein. | 0.985 |
ALJ27478.1 | rpoN | AOT14_10660 | AOT14_10640 | OstA family protein. | RNA polymerase factor sigma-54. | 0.745 |
ALJ27479.1 | ALJ27478.1 | AOT14_10670 | AOT14_10660 | LPS export ABC transporter periplasmic protein LptC. | OstA family protein. | 0.995 |
ALJ27479.1 | kdsC | AOT14_10670 | AOT14_10680 | LPS export ABC transporter periplasmic protein LptC. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. | 0.927 |
ALJ27479.1 | kdsD | AOT14_10670 | AOT14_10690 | LPS export ABC transporter periplasmic protein LptC. | Arabinose 5-phosphate isomerase. | 0.776 |
ALJ27479.1 | lptB | AOT14_10670 | AOT14_10650 | LPS export ABC transporter periplasmic protein LptC. | ABC transporter ATP-binding protein. | 0.996 |
ALJ27479.1 | rpoN | AOT14_10670 | AOT14_10640 | LPS export ABC transporter periplasmic protein LptC. | RNA polymerase factor sigma-54. | 0.748 |
kdsA | kdsB | AOT14_14570 | AOT14_15320 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.856 |
kdsA | kdsC | AOT14_14570 | AOT14_10680 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. | 0.988 |
kdsA | kdsD | AOT14_14570 | AOT14_10690 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | Arabinose 5-phosphate isomerase. | 0.992 |
kdsA | lptB | AOT14_14570 | AOT14_10650 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | ABC transporter ATP-binding protein. | 0.478 |
kdsA | lpxA | AOT14_14570 | AOT14_24920 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | UDP-N-acetylglucosamine acyltransferase. | 0.808 |
kdsA | lpxC | AOT14_14570 | AOT14_29920 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.838 |
kdsA | lpxK | AOT14_14570 | AOT14_15310 | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | Tetraacyldisaccharide 4'-kinase. | 0.846 |
kdsB | kdsA | AOT14_15320 | AOT14_14570 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. | 0.856 |
kdsB | kdsC | AOT14_15320 | AOT14_10680 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase. | 0.981 |
kdsB | kdsD | AOT14_15320 | AOT14_10690 | 3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | Arabinose 5-phosphate isomerase. | 0.914 |
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